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Protein Homology Detection Through Alignment of Markov Random Fields

Protein Homology Detection Through Alignment of Markov Random Fields

von Jianzhu Ma, Jinbo Xu und Sheng Wang
Softcover - 9783319149134
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Beschreibung

This work covers sequence-based protein homology detection, a fundamental and challenging bioinformatics problem with a variety of real-world applications. The text first surveys a few popular homology detection methods, such as Position-Specific Scoring Matrix (PSSM) and Hidden Markov Model (HMM) based methods, and then describes a novel Markov Random Fields (MRF) based method developed by the authors. MRF-based methods are much more sensitive than HMM- and PSSM-based methods for remote homolog detection and fold recognition, as MRFs can model long-range residue-residue interaction. The text also describes the installation, usage and result interpretation of programs implementing the MRF-based method.

Using MRFalign

Details

Verlag Springer International Publishing
Ersterscheinung 03. März 2015
Maße 23.5 cm x 15.5 cm
Gewicht 119 Gramm
Format Softcover
ISBN-13 9783319149134
Seiten 51

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